Networks and omics data: Theory and practice
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The OBiLab provides on-site courses on computational/biomolecular topics for prospective and practicing students and researchers in the life sciences. We also support courses on demand, customized for the needs of attendees.
Max number of participants: 40
Course Language: English
Description: The "InterOmics Tutorial Day" will focus on gene regulatory networks and protein-protein interaction.
Date: November 14th, 2014
Deadline for Subscription: November 5th, 2014
Organizers
Claudia Angelini (IAC-CNR, Naples)
Italia De Feis (IAC-CNR, Naples)
Angelo Facchiano (ISA-CNR, Naples)
Mario Rosario Guarracino (ICAR-CNR, Naples)
Tutors: Roberto Mosca (IRB Barcelona), Ettore Mosca (ITB-CNR, Milan), Roberta Alfieri (ITB-CNR, Milan), Ankush Sharm (ICAR-CNR, Naples)
Course venue
CNR, Via P. Castellino 111, Naples- IGB meeting room @ 2nd floor
Program
Bring your laptop! Last session is practical
| 9:30-10:00 |
Welcome to participants | |
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| 10:00-12:00 |
Roberto Mosca Structural Systems Biology
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Integrating protein-protein interaction networks, protein and complex structures. Interactome3D. |
| 12:00-13:00 |
Ettore Mosca Networks and 'omics' data: databases of molecular interactions, gene prioritization and subnetwork extraction |
Introduction to network-based omics data analysis. Molecular interaction networks and databases of protein-protein interactions. Network-based gene prioritization with omics data. Identification of modules and subnetworks |
| 14:30-15:30 |
Roberta Alfieri Dynamical models in computational biology: from biological data to modelling
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Principles of data integration. Examples of multilevel data integration in computational biology: the Gene-2-System Breast Cancer Database and the Cell Cycle Database. Dynamical models in computational biology: general definitions and approaches to the model construction. Databases, standards and modeling platforms. Integrating biology and mathematics: two examples for modelling the cell cycle and the central metabolism. Hands-on training: dynamical modelling using Biomodels Database |
| 15:30-17:30 |
Ankush Sharma Practical applications of tools for protein-protein interaction network analysis
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Networks topology and applications to biology using Cytoscape and Gephi, and their use in the research of real complex systems |