{"id":8126,"date":"2021-10-11T14:57:18","date_gmt":"2021-10-11T12:57:18","guid":{"rendered":"https:\/\/www.igb.cnr.it\/?post_type=mec-events&#038;p=8126"},"modified":"2021-10-11T14:57:18","modified_gmt":"2021-10-11T12:57:18","slug":"ngs-for-evolutionary-biologists-from-basic-scripting-to-variant-calling-2","status":"publish","type":"mec-events","link":"https:\/\/www.igb.cnr.it\/index.php\/events\/ngs-for-evolutionary-biologists-from-basic-scripting-to-variant-calling-2\/","title":{"rendered":"NGS for evolutionary biologists: from basic scripting to variant calling"},"content":{"rendered":"<p>This course will provide an introduction to next generation sequencing platforms, data analysis and tools for data quality control, including alignment to a reference sequence, data handling and visualisation, and variant calling and filtering (single nucleotide polymorphisms and structural variants). The course will be delivered using a mixture of lectures and computer based hands-on practical sessions, including mini-projects to be completed by the participants using the knowledge gained at the course. Projects will cover the general topics of population structure and admixture, demographic changes and natural selection.<br \/>\nThis course is aimed at PhD students and post-doctoral researchers who are applying, or will apply in the near future, high throughput sequencing technologies and the related bioinformatics tools in their research.<br \/>\nParticipants with limited UNIX\/Linux and R\/Bioconductor experience will be provided with basic understanding of the command-line operations and the foundations of the R programming language on the first day of the course.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>This course will provide an introduction to next generation sequencing platforms, data analysis and tools for data quality control, including alignment to a reference sequence, data handling and visualisation, and variant calling and filtering (single nucleotide polymorphisms and structural variants). The course will be delivered using a mixture of lectures and computer based hands-on practical [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":8117,"comment_status":"closed","ping_status":"closed","template":"","tags":[],"mec_category":[217],"class_list":{"0":"post-8126","1":"mec-events","2":"type-mec-events","3":"status-publish","4":"has-post-thumbnail","6":"mec_category-elixir","7":"czr-hentry"},"_links":{"self":[{"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/mec-events\/8126","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/mec-events"}],"about":[{"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/types\/mec-events"}],"author":[{"embeddable":true,"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/comments?post=8126"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/media\/8117"}],"wp:attachment":[{"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/media?parent=8126"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/tags?post=8126"},{"taxonomy":"mec_category","embeddable":true,"href":"https:\/\/www.igb.cnr.it\/index.php\/wp-json\/wp\/v2\/mec_category?post=8126"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}