Basic Unix and Basic R (@ Università Politecnica delle Marche)
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The OBiLab provides on-site courses on computational/biomolecular topics for prospective and practicing students and researchers in the life sciences. We also support courses on demand, customized for the needs of attendees.
Max number of participants: 14
Course Language: Italiano
Description
This course aims to provide basic skills in R for people working in biological research. The course is not meant to be exhaustive but rather illustrate possibilities. It involves lectures and practical sessions and can accommodate a limited number of students.
Date: 6-8/11/2014
Deadline for Subscription: 26/10/2014
Organizers
Università Politecnica delle Marche
- Roberto Papa (r.papa@univpm.it)
- Elena Bitocchi (e.bitocchi@univpm.it)
- Elisa Bellucci (e.bellucci@univpm.it)
- Laura Nanni (l.nanni@univpm.it)
Società Italiana di Genetica Agraria
Tutors: Enza Colonna, Francesco Musacchia
Credits: Teresa Nutile, Pasquale Elefante, Claudia Angelini
Course venue
Atelier Informatico
Dipartimento di Scienze Agrarie, Alimentari e Ambientali
Università Politecnica delle Marche (see map)
via Brecce Bianche - Monte Dago - 60131 Ancona, Italy
Course Fees: 50 Euro
Il pagamento della quota di iscrizione è subordinato all'accettazione al corso che verrà notificata entro il 28/10/2014. Le modalità di pagamento verranno indicate al momento dell'accettazione.
Cours Info (travelling, accomodation):
Elena Bitocchi - e.bitocchi@univpm.it - +39 071 220 4280
Program
Bring your laptop! All sessions are practical
| Thursday 6 - Introduction to Unix - Basic R | Friday 7 - R for statistical analyses | Saturday 8 - Applications to Genetics Analyses | |
|---|---|---|---|
| 9.00-13.00 |
BasicUnix : What is Unix/Linux - What is Linux Shell - Where find useful information - Navigation -Looking Around - Manipulating Files - How to write a Script Introduction to computational server: how to connect to and use "Bender” |
R for statistical analyses: What is statistics? - Working with dataset into R - Descriptive statistics and graphics - Customized graphs and advanced graphs - Test on the mean of a population - T-Test - Wilcoxon signed-rank test | exercises |
| 15.00 - 18.00 | basic R: What is R? - Installing R - R basic commands - Logical and Arithmetical Operators - Workspaces - Objects - Vectors, Arrays and matrices - Subsetting - Lists - Data Frame - Importing data - writing to a file - Basic graphs | R for statistical analyses: Hypotesis testing in two popupations - Two sample Wilcoxon test - The paired T-test - The Matched-pairs Wilcoxon test - Simple (univariate) Regression - Linear Regression - Correlation Coefficient - Pearson correlation | |